The short story is I did a complete upgrade with Koni FSD shocks and a full Lemforder arm kit. Every arm, tie rod end upper bushing... You name it I was replaced. That included new front wheel bearings and a B7 brake upgrade. Later on I swapped in a S4 rack and did a servotronic upgrade. The results were great smooth, quite responsive steering but I still had a clunk on certain bumps. And whatever it was it was slowly getting worse.
When I got the car it had about 135,000 miles and right now I'm at 172,000. Overall the cars is great it just clunks on small bumps at low speeds and doesn't have the tight feel that it had when I first bought it. Over time the clunk was getting annoying.
Since every other part had been replaced I started to look at the subframe. After lots of reading and finding solution from welding subframes to increase there torsional rigidity to complete new subframes I still wasn't sure what was causing the noise. Some hypothesized that the subframe cracks internally or the the crimps loosen up and welding fixes the issue. Some have had welding improve the problem but it never quite goes away. Mine looks perfect and from the factory the crimps are welded ( you need to look closely). No obvious cracks, it looks perfect.
What I think is happening:
The front bushing of the front subframe bushing have a top profile that looks like a crown. The little peaks give the subframe some cushion and let it gently absorb road imperfections. They end up seeing a lot of motion and over time the peaks wear down. As they wear the road motion is not as absorbed as smoothly and they slam a little. That wears them a bit faster and creates a bit of noise. The peaks on my bushing were pretty worn and you can see marks where they have been rubbing against the casting.
Over time the wear gets to the point where it's allowing the front of subframe to flex a lot more than it was meant to. If you put a new bushing in the subframe flexes a lot less.
That was my theory. Also, I wanted to keep the rubber isolators. Solid bushing are an option, but I wanted to keep some isolation.
Front subframe bushing upgrade.
Replace the front position, front subframe bushing with rear position front subframe bushing. ECS list this as the correct bushing for the front position on a car with sport suspension. For some reason mine did not have them. I also couldn't track my subframe PN (8E0 399 313Q) to any current number. ECS lists it as 8E0399313BG.
I found that the online manuals and AllData had nothing on how to replace the bushing. The section is blank with a note that I will be completed at a later time. I did find that my old Bentley manual for my Passat had the info and showed that Tool # 3372 was needed to press the bushing in. I have heard of people tweaking the subframe trying to press it on on a shop press, the factory tool seemed like the only reasonable solution.
Worn bushing
What its supposed to look like new:

Factory installation tool with sport rear bushing (tool # 3372). There are some other kits that go with the tool, I was able to improvise using parts from oghether puller kits that I own. The key part is the tapered split ring and the notched pressing cups.
New bushing installed ( I know the picture is sideways).

Old VS New:
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