Sorry for reviving this thread after two years, but I just wanted to update this thread with some info that might be useful for other users. I just finished retrofitting my solar panel sunroof on my 2004 A4 B6. It's a pretty easy retrofit, but it takes a lot of time and having a buddy with you helps a lot.
I took the entire sunroof assembly off an Audi S4. You cannot replace just the glass panel, because the sunroof assembly has two contacts, one on each side. When the glass is closed or lifted up, these contacts touch the glass panel, transferring the power from the glass panel to the frame. It is almost impossible to take the entire wire harness from the donor vehicle, because the two cables (live and earth) get lost in the harness with tenths of other cables that go down the A pillar and into the driver footrest. I just cut the wires and the connector that goes into the sunroof, and I also extracted the pin with a piece of wire from the fresh air blower connector. I noticed that just before entering the fresh air blower connector, the wire has something round shaped on it, covered with some plastic tubing/insulation. I guess it might be some kind of voltage regulator. It is important, so you'll need that piece of wire. After that, just buy some 4mm^2 wire and make your own harness.
The original wiring goes through the driver side A pillar. The ground wire stops on one of the grounding points of the vehicle, while the live wire goes into one of the kick-panel connectors. From there, the wire crosses the dashboard and enter into pin 6 of the fresh air blower connector. I considered that it's pointless to go through the left A pillar, so I went through the right B pillar. I grounded the ground wire into the kick-panel (you can find the grounding point on the right side by removing the glovebox; you have to remove the glovebox anyway to access the blower unit), and connected the live wire to pin 6. After doing this, just use VCDS to code the HVAC unit for a solar powered sunroof. You'll now hear that, when removing the key from the ignition, the HVAC will adjust the flaps to guide the air through the air grills and will disable recirculation if it was previously activated. If it's sunny outside, the fan should start blowing fresh air in a few seconds.
LE: Use the roof lining removal tutorial to remove the pillars and roof lining, and the just unscrew the bolts that hold the sunroof to the car. A friend is helpful here, he can hold the sunroof while unscrewing the last two bolts. Also, he can hold the sunroof from inside, wire you guide it outside through the passenger door. Be careful, the metal edges are pretty sharp, and can easily damage the door cards and the dashboard.
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