Huh, you're right about compression, I thought the S motors were 11.5 to 1 for some reason. My point with the cams and intake manifold still stands, the A6 manifold is designed for mid-range torque rather than top end power like the S manifolds. So swapping an S manifold into an otherwise stock A6 will leave you with less mid-range torque and you won't get the full top end benefit because of the stock cams. You have to keep in mind these motors are already tuned very well from the factory, the appropriate tradeoffs have been made and there's very little you can do that will result in a net gain. You'll lose more than you gain unless you're tuning for a specific use case. Ask anybody who tunes VAG motors professionally and you'll get the same response, it's not worth the time, money, and potential headache for the average person. The most you can hope to do is advance ignition timing a bit, but that comes with its own tradeoffs and can be done regardless of which tune you run.
I've personally modified an S6 tune to work with my car, and let me tell you there's no way it'll run properly without at least accounting for the injectors and MAF. It might get you by short term, but I can tell you definitively that my motor barely ran with a stock S6 tune. Sure it more or less idled but I wouldn't have driven it in that state unless I had no other choice. Once I really dove into it I found so many small differences, and I'm still chasing little issues to this day. Things like an unnatural bump or drop in power over a specific rpm range under certain conditions, things you won't notice until you daily drive it for a while. So far I've copied over a couple dozen maps from the original A6 file and it's still not perfect. I've ran files that people have personally vouched for and claimed were perfect, they were far from it, which led me to creating a tune myself.
On that note though, I really need to share my work up to this point already because there's very little documentation around this subject, just tons of anecdotes and conjecture.
Sorry for the wall of text, and I don't mean to discourage, I just want to get the point across that you can't just mix and match hardware and software from 2 different motors and expect it all to work perfectly from the beginning.
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