My initial post about this led me to realize that this was not an isolated incident.
I've got an 03 Avant with 90000 miles. I'm very easy on cars. My 98 integra GS-R with 155k miles on it still has the original clutch. I've had a noise which slowly got worse and worse over the last 20k miles. At times I thought it was tire noise, or perhaps the normal noise made by an Audi's quattro system. There aren't many around here, and my audi is the only one I've ever even been in. I mentioned it to the dealer while under warranty and after checking it out, they said it was not a bearing, and just a normal noise. The noise seemed to be getting louder, but it was only after new tires and an alignment failed to change the noise that I suspected something more serious. I took it to the local mom-and-pop shop where we put it on a lift. Turning the front wheels made an obvious bearing rumble from the transmission.
No one in a several hundred mile radius was willing to even contemplate the fix, but I managed to find a shop willing to remove and replace the transmission for me. Being fairly handy, I studied the shop manual and decided to try the repair myself. A big part of this decision was watching the video I purchased from JH Motorsports. The video is of a 6 speed rebuild, but the web site claims the 5 speed is "slightly different". Since the transmission worked perfectly, I wouldn't have to take the gears completely apart just to replace the bearing.
I purchased the tools I was missing from their list of required tools on their 5 speed rebuild kit page. I didn't buy the kit, because I wanted to see what the inside of the tranny looked like before buying parts I might not need.
I got the transmission out and brought it home. The flywheel was in very good shape, so that was one less worry. The clutch had another 30k in it, but it would have been foolish not to replace it.
With the JH video on, I quickly realized that there were more than slight differences between the two transmissions. Not one to be dissuaded, I had at it anyways.
I pulled the magnet plug from the center diff and saw there was a great deal of metal on it:
I then took off the output shaft based on how I interpreted the JH video. It turns out that this was unnecessary. On the 5 speed I could simply unbolt the center diff from the rest of the transmission. A big breaker bar and extensions made this not too difficult.
With the center diff off, I could see that there was nothing wrong with the center diff. I then took of the main case.
With the main case, I could not only see that there was nothing wrong with the output bearing.
Although I couldn't see it, I could finally confirm that the problem was the pinion bearing. Now to get at it...
Giving up on the video, I turned back to the shop manual. I needed to get a bearing off to get the input shaft out. There's a clip behind this bearing which keeps the input shaft from coming out.
This is where I ran in to trouble.
According to the shop manual, this required a special VAG tool. I found the tool for over $300 which seemed a bit steep for something I'd never need again. I drove the transmission around to every transmission shop and machine shop in the county. None could think of a tool to get it out. I called and emailed JH Motorsports multiple times for help but got no reply. I also had some worries about setting the pinion depth. This requires some very specialized tools to do right, and added another level of uncertainty.
I would also like to mention that the list of tools required for the "JHM 01A 5-speed Trans Rebuild kit" seems to be the same as the tools needed for the 6 speed. In many cases they are not needed for the 5 speed. I have a number of new tools (mostly big sockets) I may never need.
Stuck, I decided to cut my losses, and ordered a used transmission. Although I don't think it had to be the exact same code (GBT), I couldn't find anything which specifically stated that other codes were 100% equivalent. I asked on the forums, but got no answer, so running out of time, I ordered another GBT from a yard in NY and a stock clutch from ECS.
At this point, I got an email back from JH motorsports asking for a picture of the bearing I was having trouble with. I sent them a picture, and finally got a response a month later after everything was done asking "Which part were you trying to remove again?".
I opened up the new (to me) transmission just to get an idea of it's condition. While the synchros were not as nice as mine, they seemed good enough so I cleaned up the magnets (using a stronger magnet) and put it back together.
I had it re-installed with the new clutch.
The results: The transmission feels fine, the noise is gone. I think the garage got some grease on the end of the axle since I started having problems with the right front ABS sensor. They're fixing this now.
I've been playing with my old transmission and managed to get it apart using a gear puller. In this way, I was able to get the output shaft off and see the cause of my problems. Here are some pictures of my transmission's pinion bearing with 90k miles on it.
While wheel bearings do go bad, there's no excuse for this in a transmission with this few miles. I don't know enough about bearings and metallurgy, but I would guess that these were defective from new. As much as I enjoy this car, if I were shopping for cars again an Audi wouldn't be on my list.
So, if anyone is interested in any GBT parts in very good conditions, or a center diff, send me a PM. If you have the means to replace a pinion bearing, you may even want the entire thing. I'd think that a GBT which has been taken apart and checked out should be worth $1500 once put back together. I'll make you a deal as I've got a $3k hole in my bank account due to this.
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