To add to what blue said:
The SC also has a bypass valve the ECU controls, and it chooses when to allow the boost to enter the engine or when to hold it back and just lets the SC recycle the same boosted air. The max you will EVER see stock is about 11.6psi, that is under optimal conditions, if the ECU doesn't see that more boost is required it partially opens the bypass to bleed off some of the boost, controlling how much enters the engine (since the boost is going to grow the faster the engine spins, as the pulley that spins the SC for boost is directly tied to the engine and it's speed).
The APR tune makes the ECU keep this valve closed, always putting as much air as possible into the engine, so you will see more boost after about 5K RPM's - that is the point the stock ECU starts opening it and bleeding off boost 100% of the time, any other time it opens the valve is going to depend on conditions. APR also tweaks the fuel maps and ratios as well as timing in order to make the most of this newly achieved boost that makes it to the engine, hence their super gains up top in the RPM range.
Here's some more reading for you, though that post is old and some of the theories and thoughts have been either proven wrong, or added to in order to correct assumptions, but it's still a good read and valid.
http://www.audizine.com/forum/showth...charger-(Eaton)
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